T1 MRI tissue probability mask

Return to index

Inheritance graph

Defined in file : brainvisa/toolboxes/spm/types/MRI_spm.py

Used in the following processes

compute Grey / White / CSF / Skull / Scalp Mask
compute Grey / White / CSF / Skull / Scalp Mask
compute one tissue mask
Intensity normalisation PET Pipeline (spm12)
Intensity normalisation PET Pipeline (spm8)
Optimal PET Amyloid Long (OPAL spm12)
Optimal PiB Reference Region
pet pipeline using MRI (spm12)
pet pipeline using MRI (spm8)
Preprocess for PET Pipeline using MRI (spm12)
Preprocess for PET Pipeline using MRI (spm8)
Quality control for Pet with MRI Pipeline
ROI based analysis PET Pipeline (spm12)
ROI based analysis PET Pipeline (spm8)

Associated formats

BrainVISA volume formats
gz compressed NIFTI-1 image
NIFTI-1 image

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/t1mri_space/<subject>_grey_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/t1mri_space/<subject>_white_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/t1mri_space/<subject>_csf_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/t1mri_space/<subject>_skull_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/t1mri_space/<subject>_scalp_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/pet{tracer}_space/<subject>_grey_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/pet{tracer}_space/<subject>_white_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/pet{tracer}_space/<subject>_csf_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/pet{tracer}_space/<subject>_skull_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/pet{tracer}_space/<subject>_scalp_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/mni{template}_space/<subject>_grey_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/mni{template}_space/<subject>_white_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/mni{template}_space/<subject>_csf_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/mni{template}_space/<subject>_skull_mask
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/t1mri/{analysis}_from_{segmentation_method}/mni{template}_space/<subject>_scalp_mask

    Key attributes

  • brainvisa-3.2.0 :
    • center ,  subject ,  processing ,  acquisition ,  analysis ,  segmentation_method ,  tracer ,  tissue_class ,  template